usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 52.4740714285714 156.384855714286 26.3030714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1239 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 519 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 519 Number of spheres polar: 173, nonpolar: 306, out of current total: 519 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.49865 61.38351 148.89334 166.30109 17.85000 36.27931 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 141 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 100 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 88 Spheres center of coords (x y z): 52.6548093181818 159.608724090909 29.2012567045455 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.38136666964159 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 14