usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 18.1975333333333 126.515466666667 21.3514666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1097 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 689 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 688 Number of spheres polar: 195, nonpolar: 458, out of current total: 688 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.44772 27.85639 116.68759 136.49794 11.40976 31.22116 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 252 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 228 Spheres center of coords (x y z): 17.7250226754386 126.174578333333 21.2981854824561 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.6071029295054 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 15