usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 51.6069047619048 154.886378571429 27.498619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1474 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 554 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 554 Number of spheres polar: 235, nonpolar: 262, out of current total: 554 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.67562 60.96032 146.54031 164.88608 17.87009 37.48560 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 145 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 98 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 78 Spheres center of coords (x y z): 53.2064791025641 156.656576410256 29.2327348717949 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.39587464561797 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 21