usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 52.8954545454545 152.716725454545 25.7552727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 985 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 595 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 595 Number of spheres polar: 219, nonpolar: 338, out of current total: 595 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.95822 62.87962 142.71744 162.54922 15.84803 35.67565 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 151 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 113 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 75 Spheres center of coords (x y z): 54.6074732 150.201747466667 22.7731284 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.87755226984441 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 11