usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 51.9006818181818 156.468363636364 28.5607727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1500 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 712 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 712 Number of spheres polar: 281, nonpolar: 394, out of current total: 712 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.91994 61.38128 146.64755 166.46568 18.60470 38.48057 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 195 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 129 Spheres center of coords (x y z): 54.457285503876 155.446473178295 27.1616286821705 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.21640683244538 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22