usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 50.911 157.792317272727 28.5802727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1548 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 759 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 759 Number of spheres polar: 292, nonpolar: 424, out of current total: 759 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.91881 60.89505 147.87065 167.61720 18.60284 38.51344 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 189 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 142 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 118 Spheres center of coords (x y z): 53.662785 156.780331525424 27.7196356779661 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.96172328001921 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22