usefragsph not on There are 7 ligand heavy atoms Ligand center of coords (x y z): 54.038 152.925857142857 24.6444285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 859 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 344 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 344 Number of spheres polar: 156, nonpolar: 164, out of current total: 344 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 44.29454 63.88219 147.48070 162.91893 15.20217 34.56142 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 98 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 73 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 35 Final number of output spheres is: 35 Number of polar spheres: 11 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 7