usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 53.050625 153.0578775 24.4725 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 910 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 397 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 397 Number of spheres polar: 172, nonpolar: 182, out of current total: 397 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 43.13311 62.97530 146.92018 162.38388 14.96275 34.25715 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 94 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 71 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 61 Spheres center of coords (x y z): 52.0684242622951 156.952123278689 28.37575 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.48983446817526 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 8