usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 50.6493571428571 161.162997857143 31.2841428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1237 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 742 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 741 Number of spheres polar: 316, nonpolar: 332, out of current total: 741 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.68258 60.60217 151.30293 171.12204 21.32819 41.20299 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 287 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 169 Spheres center of coords (x y z): 52.2816614201184 161.689938639053 31.9050946153846 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.97271127676212 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 14