usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 50.5326428571429 160.220642142857 31.1277857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1113 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 708 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 706 Number of spheres polar: 279, nonpolar: 366, out of current total: 706 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.53518 60.48864 150.50833 170.19205 21.15491 41.12754 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 318 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 273 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 121 Spheres center of coords (x y z): 54.3987661157025 161.149872892562 33.6534945454545 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.00550879752065 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 14