usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 50.3670714285714 160.429712142857 31.1117857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1173 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 730 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 730 Number of spheres polar: 270, nonpolar: 354, out of current total: 730 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.36720 60.36252 150.49925 170.22787 21.17516 41.10505 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 146 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 64 Spheres center of coords (x y z): 53.50643140625 161.4569078125 33.1456346875 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.98365020197023 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 14