usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 53.7627 151.0904 24.7611 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 802 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 553 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 553 Number of spheres polar: 192, nonpolar: 306, out of current total: 553 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 44.33185 63.71723 141.22997 161.07477 15.38300 34.34426 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 170 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 110 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 87 Spheres center of coords (x y z): 54.4510881609196 149.953788735632 22.784038045977 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.60644867019454 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 10