usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 52.8169285714286 153.935 26.1658571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1150 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 445 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 445 Number of spheres polar: 171, nonpolar: 243, out of current total: 445 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.82747 62.79814 147.86345 163.27699 16.17359 35.91516 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 101 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 78 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 70 Spheres center of coords (x y z): 52.4017801428571 157.089229714286 29.0474617142857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.06228801220035 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 14