usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 52.3668571428571 153.962785714286 25.9089285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 808 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 434 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 430 Number of spheres polar: 147, nonpolar: 248, out of current total: 430 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.55266 62.30442 145.35704 163.61600 16.01561 35.86392 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 107 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 83 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 68 Spheres center of coords (x y z): 51.295583382353 156.744010441176 28.4801180882353 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.77016220816977 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 14