usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 30.5357 44.141075 1.9501
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2138
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1083
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1078
Number of spheres polar: 346, nonpolar: 454, out of current total: 1078
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.66482 40.53208 34.18150 54.13328 -8.03662 11.93268
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 597
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 525
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 504
Spheres center of coords (x y z): 30.0459587301587 45.2332595833333 0.169728234126984
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.55997987788055
Final number of output spheres is: 60
Number of polar spheres: 31
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 40