usefragsph not on
There are 52 ligand heavy atoms
Ligand center of coords (x y z): 46.7098653846154 19.7433846153846 108.400326923077
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1965
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 988
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 983
Number of spheres polar: 314, nonpolar: 347, out of current total: 983
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 36.33500 56.68389 10.52812 29.73736 98.45015 118.37617
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 373
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 310
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 52
Spheres center of coords (x y z): 46.7098653846154 19.7433846153846 108.400326923077
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.53295777449321
WARNING: removing a crystallographic sphere since 52>45 max spheres are present
WARNING: removing a crystallographic sphere since 51>45 max spheres are present
WARNING: removing a crystallographic sphere since 50>45 max spheres are present
WARNING: removing a crystallographic sphere since 49>45 max spheres are present
WARNING: removing a crystallographic sphere since 48>45 max spheres are present
WARNING: removing a crystallographic sphere since 47>45 max spheres are present
WARNING: removing a crystallographic sphere since 46>45 max spheres are present
Final number of output spheres is: 45
Number of polar spheres: 7
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 45