usefragsph not on There are 52 ligand heavy atoms Ligand center of coords (x y z): 46.7098653846154 19.7433846153846 108.400326923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1965 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 988 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 983 Number of spheres polar: 314, nonpolar: 347, out of current total: 983 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 36.33500 56.68389 10.52812 29.73736 98.45015 118.37617 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 570 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 508 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 497 Spheres center of coords (x y z): 47.2920003420523 21.1517489537223 108.826424688129 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.83664266819907 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 52