usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 9.80078048780488 -2.09287804878049 48.8044146341463
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2163
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1145
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1145
Number of spheres polar: 432, nonpolar: 432, out of current total: 1145
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.17867 19.78275 -11.84568 7.89290 39.13320 58.76823
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 625
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 544
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 541
Spheres center of coords (x y z): 10.0837117560074 -0.0190213308687619 51.0628919038816
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.83200782274114
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 41