usefragsph not on There are 47 ligand heavy atoms Ligand center of coords (x y z): -24.6483404255319 57.2408510638298 63.8677872340426 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1989 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 951 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 949 Number of spheres polar: 322, nonpolar: 332, out of current total: 949 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.62308 -15.73402 47.27972 67.12173 53.87921 73.67403 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 567 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 491 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 488 Spheres center of coords (x y z): -26.4881407991803 57.683137192623 62.9595137090164 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.07982777509846 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 47