usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 30.6361025641026 42.7129230769231 2.49897435897436
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2019
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 973
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 972
Number of spheres polar: 381, nonpolar: 411, out of current total: 972
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.77086 40.19053 32.74136 52.70670 -7.48354 11.38678
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 511
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 441
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 428
Spheres center of coords (x y z): 29.361409182243 43.4850812850467 0.433443037383178
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.62723538521878
Final number of output spheres is: 60
Number of polar spheres: 32
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 0
Final number of spheres that are from crystallographic ligand: 39