usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 30.3527058823529 41.2874411764706 1.72841176470588 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1668 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 781 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 775 Number of spheres polar: 245, nonpolar: 357, out of current total: 775 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.50464 40.24678 31.37310 51.22858 -8.25391 11.45526 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 291 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 245 Spheres center of coords (x y z): 28.7331668571429 41.6568657142857 -0.981389387755103 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.53532054053627 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 34