usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 68.0274736842105 47.8215263157895 8.51784210526316 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1404 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 833 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 833 Number of spheres polar: 230, nonpolar: 252, out of current total: 833 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 58.15006 77.97054 37.82663 56.00328 -1.48188 18.49725 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 317 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 264 Spheres center of coords (x y z): 67.5941382196969 45.706961060606 10.3504333712121 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.48388416575608 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 19