usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 67.9240909090909 48.0472727272727 8.32409090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1005 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 755 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 755 Number of spheres polar: 266, nonpolar: 288, out of current total: 755 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 57.97120 77.55200 38.06220 56.45314 -1.64360 18.32073 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 413 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 364 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 348 Spheres center of coords (x y z): 66.669336091954 46.764342816092 10.6561989367816 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.73220402467179 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 31 Final number of spheres that are from crystallographic ligand: 11