usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 68.6160666666667 48.4978 7.92386666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1124 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 745 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 745 Number of spheres polar: 244, nonpolar: 241, out of current total: 745 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 58.62635 78.51118 38.50156 55.78722 -2.05048 17.90469 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 410 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 347 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 329 Spheres center of coords (x y z): 67.6176956534955 45.8672296352584 10.1920205167173 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.43801248649643 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 15