usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 69.9277857142857 48.974 8.09164285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1186 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749 Number of spheres polar: 277, nonpolar: 193, out of current total: 749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 59.93129 79.88588 39.11907 58.48004 -1.89714 18.05690 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 262 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 215 Spheres center of coords (x y z): 67.9963434418605 46.0895509302326 10.472412744186 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.94204501769458 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 14