usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 70.2235555555556 48.4249444444444 6.87094444444445 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1278 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 788 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 787 Number of spheres polar: 274, nonpolar: 215, out of current total: 787 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.25476 80.19105 38.43103 58.40713 -3.12391 16.67964 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 233 Spheres center of coords (x y z): 68.9788 45.9829465236052 9.46800128755365 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.37098796421005 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 18