usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 70.2235555555556 48.4249444444444 6.87094444444445 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1278 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 788 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 787 Number of spheres polar: 274, nonpolar: 215, out of current total: 787 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.25476 80.19105 38.43103 58.40713 -3.12391 16.67964 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 464 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 399 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 377 Spheres center of coords (x y z): 68.8761427851459 46.3017302917771 9.31371564986738 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.12191270368138 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 18