usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 70.5276956521739 48.1961739130435 6.44021739130435 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1567 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 860 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860 Number of spheres polar: 300, nonpolar: 288, out of current total: 860 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.56751 80.47968 38.21058 57.92596 -3.55246 16.41969 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 245 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 221 Spheres center of coords (x y z): 69.018356561086 46.0456799547512 9.10147669683258 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.8247424976731 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 23