usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 70.5276956521739 48.1961739130435 6.44021739130435 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1567 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 860 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860 Number of spheres polar: 300, nonpolar: 288, out of current total: 860 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.56751 80.47968 38.21058 57.92596 -3.55246 16.41969 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 478 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 413 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 399 Spheres center of coords (x y z): 69.1371617794486 46.1538779448622 8.82895751879699 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.87925288605744 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 23