usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 69.7297083333333 48.5489166666667 8.13708333333334 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1484 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 694 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 694 Number of spheres polar: 208, nonpolar: 219, out of current total: 694 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 59.78064 79.71452 38.56248 56.97990 -1.79040 18.12734 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 253 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 225 Spheres center of coords (x y z): 67.9210051555556 46.6157128888889 10.6007174666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.25031942247612 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 24