usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 69.05484375 49.53578125 8.8964375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1561 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 725 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 725 Number of spheres polar: 244, nonpolar: 247, out of current total: 725 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 59.08128 79.05170 39.54087 58.10204 -1.02828 18.89017 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 296 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 240 Spheres center of coords (x y z): 68.0777056666666 46.3385874166667 10.6643349166667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.20668124138625 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32