usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): -23.969 57.4009090909091 63.8984545454546 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2028 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 975 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 975 Number of spheres polar: 320, nonpolar: 433, out of current total: 975 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.89131 -15.65957 47.53300 67.26057 53.92901 73.86813 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 339 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 275 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 243 Spheres center of coords (x y z): -26.2475494650206 57.281003127572 64.0549002880659 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.67354682756729 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 44