usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 195.550227419355 6.37638709677419 20.6207741935484 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1712 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1139 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1138 Number of spheres polar: 349, nonpolar: 486, out of current total: 1138 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 185.58336 205.39658 -3.61731 16.36327 10.62978 30.61770 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 366 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 314 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 305 Spheres center of coords (x y z): 195.884128590164 8.66629944262295 22.2082289180328 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.54470493019528 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 31