usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 68.8724054054054 48.5922972972973 9.26402702702703 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1669 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 856 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 855 Number of spheres polar: 239, nonpolar: 393, out of current total: 855 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 59.05869 78.77396 38.60756 58.48627 -0.46049 19.25585 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 304 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 249 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 240 Spheres center of coords (x y z): 68.43191275 46.7227735 10.8248575833333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52841638619595 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 37