usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 23.7205238095238 12.3827619047619 23.0744761904762 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1651 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 884 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 880 Number of spheres polar: 273, nonpolar: 368, out of current total: 880 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.75702 33.70942 2.52901 22.35611 13.08598 32.83996 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 317 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 276 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 265 Spheres center of coords (x y z): 23.5144280754717 15.4310886037736 23.4959913962264 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.33744170197908 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 42