usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 23.6280465116279 12.283976744186 23.0029534883721 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1618 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 892 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 892 Number of spheres polar: 296, nonpolar: 421, out of current total: 892 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.65749 33.58908 2.89265 22.20989 13.24310 32.12567 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 310 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 264 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): 23.7882424786325 14.4691296153846 23.7482837179487 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.68492400591187 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 43