usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 23.7603863636364 12.1058863636364 23.0371363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1797 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 992 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 992 Number of spheres polar: 312, nonpolar: 451, out of current total: 992 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.76607 33.70668 2.26080 22.10090 13.08218 33.03235 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 544 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 480 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 475 Spheres center of coords (x y z): 23.5354321684211 14.9014236210526 23.0905387368421 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.34107723859073 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 44