usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 14.6337083333333 -8.66604166666666 17.0228333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1334 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 724 Number of spheres polar: 228, nonpolar: 245, out of current total: 724 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.72500 24.63214 -18.62389 1.29775 7.25422 26.86549 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 304 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 267 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 253 Spheres center of coords (x y z): 14.9222248221344 -6.35525035573122 19.9901505533597 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.63801719696457 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 24