usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 13.7282413793103 -8.19575862068966 16.8165172413793 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1601 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 739 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 739 Number of spheres polar: 221, nonpolar: 254, out of current total: 739 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.77636 23.69223 -18.16765 1.80134 7.32083 26.79799 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 459 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 407 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 388 Spheres center of coords (x y z): 14.5253142525773 -6.21375876288659 19.4961781701031 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.10403016831139 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 29