usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 29.973325 42.70565 1.7684
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2006
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1066
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1061
Number of spheres polar: 388, nonpolar: 432, out of current total: 1061
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.03449 39.91523 32.73029 52.66585 -8.18909 11.70119
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 571
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 480
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 461
Spheres center of coords (x y z): 28.6203497830803 43.5962426681128 -0.403132234273319
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.49323441916853
Final number of output spheres is: 60
Number of polar spheres: 25
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 40