usefragsph not on
There are 46 ligand heavy atoms
Ligand center of coords (x y z): 30.7431739130435 41.1105 2.41982608695652
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2122
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 969
Number of spheres polar: 369, nonpolar: 409, out of current total: 969
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.81993 40.54156 30.90600 51.08820 -7.53231 12.13971
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 518
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 457
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 450
Spheres center of coords (x y z): 29.3007853555556 41.9496502444445 0.0616687999999997
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.34415753061126
Final number of output spheres is: 60
Number of polar spheres: 29
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 46