usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 70.8255789473684 48.4588947368421 6.77468421052632 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1429 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 728 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727 Number of spheres polar: 229, nonpolar: 303, out of current total: 727 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.82836 80.81750 38.46316 58.28281 -3.20720 16.72747 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 223 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 69.0370635858585 45.4337762121212 9.28942070707071 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.73560920567217 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 19