usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 70.0246666666666 48.2082083333333 6.64779166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1391 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 725 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 725 Number of spheres polar: 302, nonpolar: 188, out of current total: 725 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.02523 80.02394 38.21704 58.05906 -3.15438 16.43081 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 434 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 375 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 360 Spheres center of coords (x y z): 68.933383 45.5405502777778 9.45577597222223 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.15751871558224 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 24