usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 69.8004230769231 48.002 6.72834615384615 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1485 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 767 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 767 Number of spheres polar: 256, nonpolar: 283, out of current total: 767 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 59.84258 79.73403 38.03946 57.73399 -2.48652 16.71508 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 209 Spheres center of coords (x y z): 68.2675692822967 45.2955085645933 9.51781540669856 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.16024408817211 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 26