usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 29.7344358974359 1.69984615384615 34.5571538461538
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2110
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 962
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 962
Number of spheres polar: 353, nonpolar: 391, out of current total: 962
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.87805 39.66494 -8.29608 11.69458 24.89186 44.35164
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 325
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 260
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 254
Spheres center of coords (x y z): 32.4276485433071 0.929959212598425 35.6502339370079
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.88950670707698
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 39