usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 30.2345238095238 2.05580952380952 34.049619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2020 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 843 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 843 Number of spheres polar: 264, nonpolar: 395, out of current total: 843 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.65439 40.13559 -7.92693 12.03400 24.41012 44.02593 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 299 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 246 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 241 Spheres center of coords (x y z): 33.3750240248962 1.51351697095436 35.2579643568464 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85765281405215 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 42