usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 30.038 2.24078048780488 34.1566585365854
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2003
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 870
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 870
Number of spheres polar: 291, nonpolar: 381, out of current total: 870
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.09417 39.93898 -7.71814 12.20713 24.48564 44.12861
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 498
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 441
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 432
Spheres center of coords (x y z): 32.8321761342593 1.57217608796296 35.3501778009259
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.64769547432896
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 0
Final number of spheres that are from crystallographic ligand: 41