usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 29.9741463414634 2.32158536585366 34.0224146341463
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1905
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 948
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 946
Number of spheres polar: 363, nonpolar: 397, out of current total: 946
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.13072 39.97359 -7.64607 12.28470 24.47045 43.95667
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 540
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 458
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 449
Spheres center of coords (x y z): 32.4478919599109 1.41144881959911 35.1792439643652
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.83529004684605
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 41