usefragsph not on
There are 47 ligand heavy atoms
Ligand center of coords (x y z): -2.62440425531915 -3.68095744680851 31.5630425531915
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2365
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 991
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 991
Number of spheres polar: 355, nonpolar: 430, out of current total: 991
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.60761 7.37052 -13.43877 6.25461 21.57768 41.20852
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 557
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 478
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 467
Spheres center of coords (x y z): -1.95424663811563 -3.89150366167024 28.7025559100643
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.17017169652921
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 47