usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 30.0192790697674 1.96479069767442 34.4586511627907 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1826 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 940 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 940 Number of spheres polar: 340, nonpolar: 410, out of current total: 940 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.21344 39.98081 -8.01646 11.95802 24.68335 44.42428 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 327 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 267 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 226 Spheres center of coords (x y z): 31.6702849557522 1.43012438053097 36.4771286725664 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.98306308556178 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 43